Explain My Paycheck

What happens to my paycheck during a leave of absence?

Special Situationsbeginner3 answers · 7 min readUpdated February 28, 2026

Quick Answer

Your paycheck during leave depends on the type: paid leave maintains your full paycheck, unpaid FMLA provides job protection with $0 pay, and short-term disability typically pays 60-80% of salary. About 87% of private sector workers have access to unpaid family leave, but only 25% have paid family leave benefits.

Best Answer

SC

Sarah Chen, Payroll Tax Analyst

Regular employees who need to understand different types of leave and their paycheck impact

Top Answer

Types of leave and paycheck impacts


What happens to your paycheck during leave depends entirely on the type of leave you're taking and your employer's policies. Understanding the differences helps you plan financially for time away from work.


Paid time off (PTO) and vacation


When using accrued PTO, vacation days, or sick leave, your paycheck continues at 100% of your regular pay. Your employer processes payroll normally, including:

  • Full salary or wages
  • Normal tax withholding (federal, state, FICA)
  • Benefits deductions continue
  • 401(k) contributions continue (if elected)

  • Example: You earn $4,000 biweekly and take one week of vacation. Your next paycheck is still $4,000 with normal deductions of approximately $1,200, leaving you $2,800 take-home.


    Family and Medical Leave Act (FMLA)


    FMLA provides up to 12 weeks of unpaid, job-protected leave. During unpaid FMLA:

  • Paycheck amount: $0
  • Health insurance: Employer must maintain coverage (you may pay premiums)
  • Other benefits: May be suspended (401k, life insurance, etc.)
  • Job protection: Your position is guaranteed upon return

  • Short-term disability (STD)


    If you qualify for short-term disability, you typically receive 60-80% of your pre-disability salary, but the payment structure differs from regular paychecks:



    Example calculation: You earn $75,000 annually ($2,885 biweekly). With 70% STD coverage:

  • Disability payment: $2,019 biweekly
  • If employer-paid: Subject to taxes, take-home ~$1,615
  • If employee-paid: Tax-free, take-home $2,019

  • Maternity/Paternity leave combinations


    New parents often combine multiple leave types:


    1. Paid leave first: Use accrued PTO (100% pay)

    2. Short-term disability: For birth mothers (60-80% pay)

    3. Unpaid FMLA: Job-protected time ($0 pay)

    4. State programs: Some states provide paid family leave


    Benefits continuation during leave


    Health insurance: Employers must continue coverage during FMLA, but you're responsible for premium payments. Many employees see larger deductions when they return as catch-up payments.


    401(k) contributions: Stop during unpaid leave since there's no paycheck to deduct from. You cannot make contributions without earned income.


    Life and disability insurance: May continue if you pay premiums directly.


    State-specific paid leave programs


    Several states now offer paid family leave programs:



    If you work in these states, you'll see small payroll deductions (0.2-1.2% of wages) that fund these programs.


    Financial planning for unpaid leave


    For unpaid leave periods, plan for these financial changes:


    1. Lost income: Calculate your normal take-home pay × weeks of unpaid leave

    2. Continued expenses: Health insurance premiums, 401k loan payments may continue

    3. Catch-up deductions: Larger payroll deductions when you return

    4. Tax implications: Lower annual income may affect tax brackets and credits


    What you should do


    1. Review your employee handbook for specific leave policies

    2. Calculate your disability benefits if applicable

    3. Understand state programs in your location

    4. Plan your finances for reduced or eliminated income

    5. Use our paycheck calculator to estimate the financial impact


    Key takeaway: Paid leave maintains your full paycheck, while unpaid FMLA provides $0 income but job protection. Short-term disability typically replaces 60-80% of your salary, with tax treatment depending on who pays the premiums.

    *Sources: [Department of Labor FMLA Fact Sheet](https://www.dol.gov/sites/dolgov/files/WHD/legacy/files/whdfs28.pdf), [IRS Publication 525](https://www.irs.gov/pub/irs-pdf/p525.pdf)*

    Key Takeaway: Paid leave maintains your full paycheck and benefits, unpaid FMLA provides job protection with $0 pay, and disability benefits typically replace 60-80% of salary with varying tax treatment.

    Leave types and their paycheck impact

    Leave TypePay AmountBenefits ContinueJob Protection
    Paid PTO/Vacation100% of salaryYesYes
    Unpaid FMLA$0Health insurance onlyYes
    Short-term disability60-80% of salaryVariesYes (if FMLA eligible)
    State paid family leave60-85% of salaryVaries by stateYes
    Workers' compensation60-80% of salaryVariesYes

    More Perspectives

    SC

    Sarah Chen, Payroll Tax Analyst

    Parents planning for maternity, paternity, or family medical leave

    Parental leave planning strategies


    As expecting or new parents, you'll likely combine multiple types of leave to maximize both time with your child and financial stability. Strategic planning can significantly impact your family's finances.


    Maternity leave payment timeline


    Most new mothers use a combination of leave types in this typical sequence:


    1. Before birth: May use sick days or PTO if bed rest is required

    2. Birth recovery: Short-term disability (6-8 weeks, 60-80% pay)

    3. Bonding time: Paid PTO or state family leave programs

    4. Extended time: Unpaid FMLA for remaining weeks


    Example for California parents earning $80,000:

  • Weeks 1-6: Disability insurance (70% = $1,077/week)
  • Weeks 7-14: Paid family leave (70% = $1,077/week)
  • Weeks 15-24: Unpaid FMLA ($0/week)
  • Total paid leave income: ~$15,078 vs. normal $30,769 for 24 weeks

  • Partner/paternal leave considerations


    Non-birth parents typically have fewer paid options:

  • Use accrued PTO for full pay
  • State paid family leave programs (where available)
  • Unpaid FMLA for job protection
  • Some employers offer paid paternal leave

  • Dependent care FSA adjustments


    During extended leave, you may not need childcare, affecting your dependent care FSA. You can change contributions during qualifying life events like birth, but unused funds may be forfeited.


    Health insurance premium payments


    During unpaid leave, you're still responsible for your health insurance premiums. Many parents see larger payroll deductions when returning to work as the employer recoups unpaid premiums.


    Planning tip: Set aside money before leave to pay health premiums directly, avoiding large catch-up deductions later.


    Key takeaway: Combining different leave types strategically can provide 8-14 weeks of partial pay plus additional unpaid job-protected time, but requires careful financial planning for income gaps.

    Key Takeaway: Strategic leave planning can provide 2-3 months of partial income replacement, but families should budget for significant income reduction during extended unpaid periods.

    SC

    Sarah Chen, Payroll Tax Analyst

    Older employees considering medical leave or phased retirement options

    Pre-retirement leave considerations


    Employees nearing retirement face unique considerations when taking medical or family leave, as these decisions can impact retirement timing, Social Security benefits, and healthcare coverage.


    Impact on retirement benefit calculations


    Extended unpaid leave reduces your annual earnings, which could affect:

  • Social Security benefits: Based on your highest 35 years of earnings
  • Pension calculations: If based on final years or career average
  • 401(k) contributions: No contributions during unpaid leave periods

  • Example: A 62-year-old earning $90,000 takes 6 months unpaid FMLA, reducing annual earnings to $45,000. If this becomes one of their highest 35 earning years, it could slightly reduce Social Security benefits.


    Health insurance bridge strategies


    For employees planning to retire soon after medical leave:

  • Maintain employer coverage through FMLA
  • Consider COBRA continuation (up to 18-36 months)
  • Plan Medicare enrollment if eligible
  • Review spouse's coverage options

  • Phased retirement vs. medical leave


    Some employers offer phased retirement programs that might be preferable to unpaid medical leave:

  • Reduced hours with proportional pay
  • Maintained benefits eligibility
  • Continued 401(k) contributions
  • Gradual transition to retirement

  • Long-term disability considerations


    If medical issues may prevent return to work, understand your long-term disability options:

  • Group LTD typically pays 60% of salary until age 65
  • May coordinate with Social Security disability
  • Could bridge income until full retirement

  • Early retirement timing


    Medical leave might accelerate retirement decisions. Consider:

  • Pension eligibility dates
  • Health insurance coverage gaps
  • Social Security claiming strategies
  • 401(k) withdrawal rules

  • Key takeaway: Pre-retirees should carefully weigh how extended leave affects retirement benefit calculations and consider whether early retirement might be more advantageous than returning to work.

    Key Takeaway: Employees near retirement should evaluate whether medical leave or early retirement provides better financial outcomes, considering impacts on Social Security, pensions, and healthcare coverage.

    Sources

    fmladisabilitymaternity leaveunpaid leavebenefits

    Reviewed by Sarah Chen, Payroll Tax Analyst on February 28, 2026

    This content is for educational purposes only and is not a substitute for professional tax advice. Consult a qualified tax professional for advice specific to your situation.